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Transcript of 11 TRAINING COURSE ON MALARIA ELIMINATION FOR THE GMS Databases Ryan Williams Chang Mai, 17-21...
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11
TRAINING COURSE ON MALARIA ELIMINATION FOR THE GMS
DatabasesRyan WilliamsChang Mai, 17-21 August 2015
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DATABASE
Basic conceptso A database is a collection of data which can be used alone or
combined and related to other data to provide facts or answers to specific questions.
Example: How many confirmed malaria cases in district A in 2015?
What, Where and When?
Relational databases are the most popular type of databaseo Client-Server
o MS SQL, Oracle, Sybase, DB2o Stand-alone
o Access or other file based desktop databases
Structured Query Language (SQL) is a standard language for accessing and communicating with a database
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DATABASE
Relational databaseso Are sets of data organized into tableso Tables are comprised of fieldso Each table can have a relationship with
another table
Date of Birth
Health Facility Visits
Patient name AddressPatient ID
Health Facility NamePatient ID
Patients
Date of Visit
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DATABASE
Database
Client-Server
Tables and Fields
SQL
Data management System (DBMS)
Data management application
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DATABASE
Example of a “One-to-many” relationship between two tables
Patients HF Visits
Patient ANameAddress
Patient A visited 1-Apr-2015
Patient A visited 10-Jun-2015
1 n
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CLIENT-SERVER DATABASE
Server
Client-Servero Data on separate dedicated machine (Server)o Multiple user can access the data simultaneouslyo Speed, Security
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DBMS
DATABASE MANAGEMENT SYSTEMSo A database management system (DBMS) is system software for
creating and managing databases. The DBMS provides users and programmers with a systematic way to create, read, update and manage data
o Paid:o Microsoft SQL Server, Oracle, Sybase, IBM DB2 and MS Access
o Free:o MySQL, PostgreSQL
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DATABASE MANAGEMENT SYSTEM
DBMS
Database
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DATABASE MANAGEMENT SYSTEM
Conso Server requiredo Installation complexo Data management resource
required
Proso Robust installationo Security, Speedo Standard data access
mechanism
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EXCEL
Excelo Desktop solutiono Each sheet can be
considered a tableo Column = Fieldo Row = recordo Can be shared via
network, email, etc.
xls
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EXCEL
Pros
Accessible and easy to use
Easy charts
Data analysis
Cons
Data resides on local computer
Not secure
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EXCEL FORMS
Two types of formso Control (150)o Elimination (110)
Used to collect national level data on:
o Cases and deathso Policieso Interventionso Fundingo Expenditures
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EXCEL
Excel used in Rapid Impact Assessment data collect
o Monthly aggregated data entered into sheets from health facilities (10 years)
o Sheets are merged and uploaded to SQL database for data cleaning and analysis
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ACCESS
Accesso File basedo Desktop solutiono Accessible and easy
to useo Easy data
managemento Application interfaceo Reportso Can be shared via
network, email, etc.
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MS ACCESS
Proso MS Access is readily available or easily installedo Runs on basic computers
Conso Data resides on a local installationo Not secure
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COMPARISON
Excel o Data analysis, distributed data collection, accessibility
Stand-alone database: Accesso Quick, easy data management
Client-Server: DBMSo Robust data storageo Vast data management capacityo Security
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DATA MANAGEMENT SOFTWARE
Software applicationo Interface between the user and the DBMSo Provides user with screens to access and manipulate the datao Reduces the complexity of managing the database
Software Interface
Database
DBMS
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DATA MANAGEMENT APPLICATION
DHIS2 (District Health Information System)o Is a flexible, web-based open-source information system with
awesome visualization features including GIS, charts and pivot tableso Versatile data management via user interfaceo Customizableo Custom reportingo GIS
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Data Organization
Data is organized byo Data elements
o Total number of microscopy positiveso Dimensions
o Place (Organization Unit)o Country, Province, District, Health facility, Foci
o Hierarchyo Period
o Day, Month, Year
o Value
What?
Where?
When?
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Data Organization
Setup a system to enter data and reporto Create
o Data elements (what?)o Places (where?)
o Districts,…o Indicators (calculations)
o Add data elements to datasetso Assign frequency of data collection
o Daily, Weekly, Monthly,…
o Create a form for the dataseto Enter data
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DHIS2
Health Facility Register
Indicators
Surveyresults
Slide positivity rate
DHIS2
Pivot tables Custom reports GIS mapping
DBMS
Form AForm B
Number of slides examined
Number of slides positive
Parasite prevalence
DatasetData Elements
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DHIS2
Health Facility Register
Case based data
Aggregated data
Patient data
DHIS2
Freq.weeklymonthly
DBMSAggregation
Pivot tables Custom reports GIS mapping
Form A Number of slides examined
Number of slides positive
Parasite prevalence
Dataset
Who?
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DHIS User Interface
Select place, dataset and time period
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The Interface
Districts
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Data Entry Forms
Custom formo Designed in HTMLo Matches the layout of Excel
formso Three years on data
presented
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Data Entry Forms
Data entry forms are comprised of data elements
o Created using the UI
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Case based reporting
Individual patient data
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Case based reporting
Individual or aggregated reports from case based data
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Other Data Entry Options
Excel/CSV data importationo Template based
SMS data submissionso Reporting data by sending an SMS to the system
PDF data entry formso PDF generated by systemo Can be customized with Adobe Acrobat
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Form Data Validation
Validationo Easy to create validation
rules
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Reporting
Pivot table
Very comprehensive
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Pivot table module is very comprehensive o Used to produce the charts for the online country profileso Save and share functiono Export functions
Reporting
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Dashbaord
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Reporting
+ Profiles/Bulletinso Using the Apps (WebAPI)o Graphs built using the online reporting tool
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GIS
+ Profiles/Bulletinso Using the Apps (WebAPI)o Graphs built using the online reporting tool
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Custom menu
Menu easily customizedo Via the UI
o User security settingso Mina applications(Apps)
can be added directly to menu
Appso HTML pages using
JavaScript to make HTTP requests to the WebAPI
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Workflow and Approval
Dataset approval at national and regional levelso Districts submit form by clicking the “Completed” buttono The next higher lever receives an email
o Approveso If approved, level focal person receives an email
o Un-Approveso Goes back for correction
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Communications
o Data commentingo Audit trailo Follow-up analysis
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Thank You!