1 Digital scientific information in 2007 [email protected]@vub.ac.be...

1

Digital scientific information in 2007

[email protected] Belgium

Prepared for a presentation at ADEKUS = Anton de Kom Universiteit van Suriname, in Paramaribo, SurinameJune 2007

2

These slides should be available from the WWW site

http://www.vub.ac.be/BIBLIO/nieuwenhuysen/presentations/

(note: BIBLIO and not biblio)

3• Online literacy

• Online information sources and services» Introduction

» Dictionaries and encyclopaedias

» Internet directories and indexes

» Current awareness services

» Book databases

» Fee-based information services

» Databases about journal articles

» Multimedia

» Evolution

- contents - summary - structure- overviewof this presentation

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Information literacy

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Our world: future trends

Future trends in our world

• Complexity

• Dynamics and evolution Speed and acceleration

• Internationalization Globalization

• Economic products less based on natural resources and more on “knowledge”

Answers / Requirements / Solutions / Reactions

• Knowledge and skills

• Adaptability Flexibility

• Global co-operation Mobility

• Education, research, exploitation of knowledge is important

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Information, computer and media literacy overlap

Media literacy

Computer literacy

Information literacy

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Information literacy: definition: the importance of information

1. To understand in general the nature, the value and the importance of information. The ability to recognize when information is needed, when information can help to make progress, to solve a problem, to make a decision…

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Information literacy: definition: finding information

2. The ability to search, find, locate relevant, needed information! (Identify concepts, select information sources, formulate queries….) The ability to cope with information overload.

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Information literacy: definition: evaluating information

3. The ability to evaluate the quality and suitability of retrieved information!

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Information literacy: definition: managing information

4. The ability to manage information! (Saving information, ordering information in folders on computer, finding information in your own collection…= “personal information management”)

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Information literacy: definition: sharing information

5. The ability to apply/use information effectively.The ability to keep up-to-date on the topics/subjects that are relevant for you. The ability to communicate with others, to share information with others!(Using citations, live presentations, electronic mail,your own WWW site, publishing…)

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Online access information sources and services

Introduction

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Online information sources: summary

• The following gives a general overview of online accessible information sources.

• This overview is not limited to or focusing on a particular concrete subject domain/area.

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Internet based information sources: problems / difficulties (Part 0)

• Through the Internet, we can access information sources and information services.

• This has become increasingly important and interesting since 1990.

• The advantages are tremendous and well appreciated.

• However, the following are some of the remaining difficulties and bottlenecks.

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• Redundancy and overlap:On the one hand, there is too much information on some topics; in other words, the redundancy and overlap are high in many cases. Only few information sources: On the other hand, there are only few information sources on some topics.

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• No order is imposed on most sources.Quality checks / quality controls are not performed.Related to this: it is not required to register new information offered. Is the information that you find real, honest, authentic?

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• Change is the only constant: Information sources are constantly changing, growing, but sometimes disappearing.

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• Scattering: There is no single simple but powerful system to find relevant information through the Internet.In other words: integration / aggregation is still far from perfect.

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• Slow: The Internet is in many places and for many applications not yet fast enough.

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Types of online access information systems

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Primary versus secondary computer sources / systems / services

• Primary sources /systems /services

directly usefulExamples: - books, - collections of articles on the Internet (like Hinari and Agora in ADEKUS)

• Secondary sources /systems /services !

»helping to access / use the primary services

»“travel agencies”, “navigation services”...

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Dictionaries and encyclopaedias accessible through the WWW

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Dictionaries and encyclopedias through the WWW: introduction

• Dictionaries and encyclopedias are the first choice among many types of information sources,

»when we do not need detailed information on a common topic

»when we want to prepare a more detailed search on an unfamiliar topic, by searching for the right spelling, synonyms, context…

• Some dictionaries and encyclopedias are available through the WWW free of charge.

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Dictionaries accessible through Internet and the WWW: example

• The American Heritage® Dictionary of the English Language

»Over 200,000 entries, 70,000 audio word pronunciations, 900 full-page color illustrations

»Available free of charge from http://education.yahoo.com/reference/dictionary/

Example

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Encyclopedias accessible through Internet and the WWW: examples

• Encarta Concise Free Encyclopedia

»http://encarta.msn.com/

»Available in English and in some other languages

Example

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• Encyclopædia Britannica only a small part is available free of charge + links to selected WWW sites

»http://www.britannica.com/ [cited 2006]

• Encyclopædia Britannica Concise

»http://education.yahoo.com/reference/encyclopedia/

Example

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• The Canadian Encyclopedia(in English and in French):

»http://thecanadianencyclopedia.com/

Example

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• Wikipedia

• A free-content encyclopedia that anyone can edit.

• http://en.wikipedia.org/wiki/Main_Page

Example

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Encyclopedias accessible through Internet and the WWW: overviews

• A list / overview of encyclopedia on the Internet:http://www.internetoracle.com/encyclop.htm

• Other lists of encyclopedia on Internet can be found as a part of more general directories of Internet-based information sources.

Example

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Internet directories and indexes

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Internet global subject directories:introduction

• They are virtual libraries with open shelves, for browsing.

• They are manually generated, man-made by many people.

• They can be browsed following a tree structure or a more complicated variation.

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Internet global subject directories: pros and cons

• They cover a small number of selected WWW sites, in comparison with the total number of sites that are accessible

+ Browsing is possible (formulating a query is not needed).

+ The selected, included sites should be better than average.

- They are NOT suitable for deep, detailed, specific searches with a high coverage.

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Internet global subject directories: Yahoo!

• A hypertext global subject directory can be found at http://dir.yahoo.com/

• Entries are NOT rated.

• Accessible free of charge.

Example

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Internet global subject directories: Yahoo!: screenshot of home page

Example

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Internet global subject directories: Yahoo! links in pediatrics

• Health > Medicine > Pediatrics:• International Pediatric Chat - for professionals to share information and education

regarding children's health care.

• National Med/Peds Residents' Association - organization for residents, practioners and medical students interested in combined internal medicine and pediatrics.

• Neonatology Network - information and communication platform for neonatologists and pediatricians.

• Pediatria OnLine - qui si parla di bambini, fra pediatri e con le famiglie.

• Pediatric Critical Care

• Pediatric Database (PEDBASE) - containing descriptions of over 500 childhood illnesses.

• Pediatric Endocrinology Conference - LWPES/ESPE joint meeting occuring July 6-10 2001.

• Pediatric Endoscopic Photos - illustrating intestinal problems in children.

Example

http://srd.yahoo.com/drst/28916965/*http://www.pedschat.org/

http://srd.yahoo.com/drst/6573636/*http://www.MedPeds.org/



http://srd.yahoo.com/drst/957354/*http://www.neonatology-net.com/

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Internet global subject directories: dmoz Open Directory Project

• A hypertext global subject directory can be found athttp://www.dmoz.org/


• It is allowed to use the contents also in other systems;this is indeed done in the Google Directory and Webbrain.

Example

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Internet global subject directories: dmoz: screenshot of the starting page

Example

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Internet global subject directories: Intute

• A collection of hypertext subject directories that focus on academic information sources can be found from 2006 athttp://www.intute.ac.uk/


• Also tutorials are offered about how to find information in specific subject domains.

Example

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Internet subject directories: non-global, more specific systems

a directory limited to sources in/of a country or region

a directory restricted to a specific subject domain

(“portal”)

a global subject

directory

the complete WWW

can lead to

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Internet subject directories focusing on a specific subject domain: example

• Communication studies:

»http://www.lib.washington.edu/subject/communications/lrcs/

Examples

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• Marine science and oceanography:

»http://oceanportal.org/ = http://ioc.unesco.org/oceanportal/

Examples

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• Fishing:

»http://www.onefish.org/

Examples

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Internet indexes:automated search tools

• Several systems allow to search for and to locate many items (addressable resources) in the Internet in a more systematic, direct way than by only browsing/navigating.

• These systems do NOT search the contents of computers through the real Internet in real time and completely when a user makes a query. Searching in that way would be much too slow due to limitations in the technology.

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Internet indexes: scheme of the mechanism

User searching for Internet based information

Internet client hardware and software

user interface to a search engine Internet information source

Internet index search engine Internet crawler and indexing system

database of Internet files, including an index

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Internet indexes:description of the mechanism

Each of these search systems is based on:

• a database of links to pages / URLs that can be retrieved by searching with queries through a big index that is built machine-made on the basis of the contents, the texts, of these pages(to build this database and to keep it up to date, pages are continuously collected from the Internet by a “robot” computer software system)

• a search system with a user interface in a WWW form, to allow the user to search through that database

46

Internet indexes: Google (Part 1)

• http://www.google.com/

• Available since 2001 with most of its features.

• The most popular system in 2003, 2004, 2005, 2006…

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Internet indexes: Google (Part 2)

• Full-text searching is possible of many files that are available through the WWW.

• Not only HTML and plain text pages are covered, but also the first part is indexed of many files in other file formats, such as

»Adobe PDF,

»Microsoft Word, Microsoft Excel, Microsoft PowerPoint

»Rich Text Format…

48

Internet indexes: Google Scholar

• Google Scholar allows us to search for more scholarly information sources, including journal articles.

• A beta (test) version has been available since November 2004.

• The system is accessible starting from the home page of Google as one of the additional services, or more directly from http://scholar.google.com/

• The online manual explains the system, but provides no details on algorithms applied and on coverage.

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Internet indexes: Google Scholar: screenshot

Example

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Internet indexes: the coverage of Google Scholar

• The information is harvested in a more or less automatic way from the public access WWW and from databases of some scholarly publishers that publish

»full-text, primary electronic journals

»bibliographic, secondary, abstract databases including

—the Ingenta database of journal articles

—the Pubmed database

—some databases of the company CSA

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Internet indexes: MSN Web Search = Live

• Available from: http://search.msn.com/

• Since 1998.

• Offered free of charge by Microsoft.

• You can search for WWW content.

• Since 2006 available from http://www.live.com/

Example

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Internet indexes: Scirus

• The search interface: http://www.scirus.com/

• Since 2001.

• Offers not only access to files in html format, but also to files in PDF.

• Is partly based on the Fast WWW search system.

Example

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Internet indexes: Scirus contents and coverage

• Allows you to search for more or less “manually” selected

»scientific WWW pages, plus

»the contents of some scientific, bibliographic databases.

• In the sense that Scirus is dedicated to scientific information, it is similar to Google Scholar.

Example

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Internet indexes: Scirus contents details

• Is offered free of charge by the publisher of scientific journals, named Elsevier.

• Offers bibliographic descriptions of the articles that are published in close to 2000 peer-reviewed journals that are made available through the Internet/WWW site ScienceDirect by Elsevier !However, the full-text can be downloaded only when a fee has been paid to the publisher.The similar and competing open access search system named Google Scholar does NOT include these important data.

Example

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Internet indexes: Scirus contents details

• Files from several scientific open archives/repositories that contain scientific research articles that can be downloaded free of charge.

• Bibliographic references from the open access Medline/Pubmed database.

• Since 2005: more than 10 million patent descriptions

Example

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Internet indexes: Yahoo!

Example

• An Internet search system is offered through http://www.yahoo.com/

• This is offered BESIDES the well-established, classical Yahoo! subject directory.

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Internet indexes cover only a part of the Internet: metaphore

The “visible” part of Internet

The “deep, hidden, invisible” part of Internet and the WWW, (that is not searchable using a global index like Google, Yahoo!...)

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Internet indexes cover only a part of the Internet: introduction

• Why can Internet indexes find only a part of what is in fact available through the Internet?

• Quantitative technical limitations:

»Each Internet search system has indexed only a part of the static WWW pages that are available for indexing.

• Qualitative technical limitations:

»Besides the static WWW pages that Internet search engines try to cover, many other, quite different sources exist, that are also available through the Internet, but that are not incorporated in those search engines.

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Internet

Internet indexes cover only a part of the Internet: scheme

WWW

Databases and

file archives accessible through

the Internet

telnetftp...

telnetftp...

CGI, ASP,...CGI, ASP,...

Rapidly changing information, such as news, weblogs=blogs…

Information accessible only when passwords are used

Static texts in the WWW that can be indexed( = on HTTP server computers)

covered partly by Internet indexes

Wordfiles

PDFfiles

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Databases accessible over the Internet: examples

• Medline/PubMed offers bibliographic descriptions of publications on medicine, free of charge.

Example

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Databases accessible over the Internet: examples

Example

• http://oaister.umdl.umich.edu/

• “Our goal is to create a collection of freely available, previously difficult-to-access, academically-oriented digital resources that are easily searchable by anyone.”

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Current awareness services focusing on WWW pages

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Current awareness services focusing on WWW pages: Google Alerts

• Available at http://www.google.com/ and then see the page with additional servicesor more directly from http://www.google.com/alerts/

• Since 2004.

• Can discover relevant changed or new WWW pages for you in the future.

• Is based on the popular Internet index Google.

• Works with search queries given by you that are stored on their server computer.

Example

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Current awareness services focusing on WWW pages: Google Alerts

Example

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Public access book databases

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Public access book databases: introduction

Public access book databases: introduction

• Even in this age of Internet-based information sources, a lot of information is still distributed in the form of printed books.

• The contents of most books is (still) not available on the Internet.

• Most general Internet search tools do NOT allow you to find out about the existence of books that may be interesting for you.

• So, specific search tools to find books can be useful.

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Public access book databases: an overview

Public access book databases: an overview

• (Databases by publishers.)

• (Fee-based databases by commercial providers)

• (Databases of computer-based versions of books.)

• Catalogue databases by book distributors / bookshops!

• Online public access catalogue databases of libraries

• Databases of scanned book pages (really taking off since 2004)

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Book databases accessible free of charge: examples in U.S.A.

Book databases accessible free of charge: examples in U.S.A.

• Amazon.com (US):http://www.amazon.com/

• This company offers also different, more local versions that offer books in other languages, such as http://www.amazon.co.uk/ http://www.amazon.fr/

• note: amazon, NOT amazone

• Subject description is poor.

• Take into account delivery costs: postage + tax

Examples

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Book databases accessible free of charge: examples in Europe

Book databases accessible free of charge: examples in Europe

• Blackwell’s on the Internet (International, academic books):http://www.blackwell.co.uk/

• VLB for books in Germanhttp://www.buchhandel.de/

• For books in Frenchhttp://www.chapitre.com

• Boeknet - De Nederlandse Internet Boekhandel (Dutch)http://www.boeknet.nl/

Examples

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Free public access federated search systems for books: introduction

Free public access federated search systems for books: introduction

• Also available free of charge are searches through the independent catalogue databases of several bookshops, in one and the same action.

• Furthermore the results from the various shops are presented in such a way that the user can easily compare them (for instance: price, delivery costs…)

• We can call these “meta-catalogues”.

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Federated searching: scheme

information sourcesportal for

meta-searching = federated searching= cross-database searching

portal for meta-searching = federated searching= cross-database searching

End user

End user

End user

End user

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Free public access federated search systems for books: examples

Free public access federated search systems for books: examples

• http://www.addall.com/ [accessed 2007]Takes into account your location (country) and calculates the cost to ship/send a book to you.

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Full-text databases of books: introduction

Full-text databases of books: introduction

• Some organisations have scanned the contents of thousands of old as well as recent books, to make them searchable through the Internet.

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Full-text databases of books: Amazon

Full-text databases of books: Amazon

• http://www.amazon.com/ and choose BOOKS

• Since 2004

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Full-text databases of books: Google Book Search

Full-text databases of books: Google Book Search

• In November 2005 http://www.books.google

• The contents of this database is obtained

»directly from book publishers, and

»by scanning the contents of books from a few big libraries

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Online Public Access Catalogues of libraries

Online Public Access Catalogues of libraries

• Mainly to find older books, the catalogues of libraries can be useful.

• Most are accessible online and free of charge.

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General conclusion concerning book databases

The

one and only, international, complete, ideal,

bibliographic database

does NOT exist,

but the united forces of the different available book databases should be satisfying.

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Fee-based online public access information services

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Types of online access information systems: “free” versus “fee”

Public access information sources free of charge

Fee-based online information services(NOT free of charge)

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Types of online access information systems: “free” for members only

Public access information sources free of charge

Fee-based online information services(NOT free of charge)

Fee-based online information services, made accessible “free of charge”

by an institute to its members

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Online access databases about journal articles

82

Online access databases about journal articles: overview

Online access databases about journal articles: overview

• Thousands of fee-based online access databases offer bibliographies or full-texts of journal articles in particular subject domains and published by many publishers.

• Many publishers offer searchable bibliographies, but only of their own publications. (for instance Elsevier, Emerald, Sage)

• Only few large databases offer access to bibliographies of articles published in journals from many publishers, free of charge.

83

Online access databases about journal articles: Ingenta (1)

Online access databases about journal articles: Ingenta (1)

• Ingenta allows you to search a bibliographic database of millions of journal articles, including titles, authors, in many cases abstracts.

• The organisation claims to be “The most comprehensive collection of academic and professional publications”

• Available from: http://www.ingentaconnect.com/

Example

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Online access databases about journal articles: Infotrieve

Online access databases about journal articles: Infotrieve

• Available from:

»http://www.infotrieve.com/

»http://www3.infotrieve.com/

• Infotrieve allows you to search free of charge in a bibliographic database of the articles of more than 20 000 journal titles and conference proceedings, NOT full-text.

85

Online access databases about journal articles: Scirus

• The search interface: http://www.scirus.com

• This is a specialised Internet index that allows you to search for selected scientific information (only) on the WWW.

• This includes the peer-reviewed articles in the journals that are published in ScienceDirect by Elsevier.

• Offered free of charge by Elsevier.

• An article can be downloaded in full-text format only when a fee has been paid to the publisher.

86

Online access databases about journal articles: Google Scholar

• Google Scholar allows us to search for more scholarly information sources, including journal articles.

• A beta (test) version has been available since November 2004.

• The system is accessible starting from the home page of Google as one of the additional services besides the normal, classical WWW search.

• The online manual explains the system briefly and provides no details.

87

Online access databases about journal articles: Microsoft Academic Live

• http://academic.live.com/

• Since April 2006.

• Free of charge.

• Allows searching in a database of

»Bibliographic descriptions of articles published in a selection of academic journals, provided mainly by a limited number of publishers

»Open Archives on the Internet, crawled/harvested by Microsoft

88

Online access databases about journal articles: DOAJ

• The Directory of Open Access Journals started in 2003 as a directory/database of titles of electronic journals that can be accessed by anyone free of charge.

• http://www.doaj.org/

• More recently, this system allows deeper searching (down to the level of the titles and even abstracts of journal articles) for an increasing number of the journals that are included in the directory.

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Online access databases about journal articles: DOAJ screenshot

90



Finding multimedia files on the Internet

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Finding multimedia files on the Internet: introduction

Several public access search systems are available free of charge, to search the Internet for multimedia files:

»images / pictures (either artwork, either photos, or both)

»sound / audio files (music, speeches...); video

92

Finding images on the Internet:introduction

• Several public access search systems are available free of charge to search for images / pictures (either artwork, either photos, or both) on the Internet.

• When searching for images, the search results from such a system offer not only links to the image files on the Internet, but also directly small versions of the images (so-called “thumbnails”).

93 Examples

Finding images on the Internet:screen shot of a Google image search

94Examples

Finding images on the Internet:examples of search engines (1)

• http://alltheweb.com/

• http://images.search.yahoo.com/ [accessed in 2007] or http://yahoo.com/ or http://www.yahoo.com and then go to searching ‘Images’

95Examples

Finding images on the Internet:examples of search engines (2)

• http://images.google.com/ ! or through http://www.google.com/[accessed in 2007] The largest database in this category (at least in 2002, 2003, 2004, 2005, 2006…).For each result, not only a thumbnail is offered, but also directly the origin with the readable URL; this makes it easier to guess the relevance of the document.

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Evolution

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Online access information: evolution and future trends

• An increasing amount of information becomes available online.

• A growing amount of this online information becomes available free of charge.

• The quality and ease of use of software on server as well as client is growing.

• A consequence is: An increasing number of end-users searching for information online.

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Online access information: easier information retrieval systems

• Individual information retrieval systems become easier:

»they react faster;

»they can provide access to more data/information in one action;

»their user interfaces are simple, but more sophisticated, intelligent retrieval algorithms can nevertheless deliver satisfactory results in most simple cases.

99

Online access information: more complicated information market

• The whole information landscape consists of more and more decentralised information sources, each one bringing an individual user interface that should be mastered. Making the right, ideal choice among the sources becomes not easier, perhaps even more complicated every day.

100

Online access information: easy or complicated?

• In the case of simple information needs, the WWW and the search tools can work like “magic”.

• However, in the case of more complicated information needs, there is still is no “magic button” that brings you immediately to all the required information.

101

Questions?

Suggestions?

Topics for discussion?

102

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