1 DAF Phase 3 Objective Enable researchers to access data from multiple organizations and data...
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Transcript of 1 DAF Phase 3 Objective Enable researchers to access data from multiple organizations and data...
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DAF Phase 3 ObjectiveDAF Phase 3 Objective
Enable researchers to access data from multiple organizations and data sources within a Learning Health System (LHS) infrastructure
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PCORI/PCORnet PCORI/PCORnet Abstract Abstract ModelModel
Researcher Interface
23CDRN 1Data
Mart
Data Source 2
Patient Generated Data
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CDRN 2Data Mart
PPRNData Mart
Data Source 1
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Step 1: Creation of Data Marts within CDRN’s and PPRN’s1.Export Transform Loads are written to extract data from one or more data sources and loaded into a data mart to be queried by researchersStep 2-5: Researcher submitting a query and examining the query results2.Researcher composes a query to be submitted to various data marts (permissions and access controls determine who can query what data, at what time, and for what purpose)3.Queries are distributed to various sites depending on access controls, frequency, date, time, orchestration pattern, etc.4.Queries are executed and results computed on the data marts, optionally reviewed manually5.Query results are released by the networks to the researcher along with data disclosure policies
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Step 1Step 1
CDRN 1Data Mart
Data Source 2
Patient Generated Data
1
CDRN 2Data Mart
PPRNData Mart
Data Source 1
• Proprietary Extract Transform Loads (ETLs) are used to extract data from data sources and populate the PCORNet CDM.
• ETLs are created by the CDRNs working with the vendors for each data source onboarded onto the CDRN/PPRN.In DAF Phase 3 these would be replaced by1. Data Source implementing a FHIR Extraction layer using DAF FHIR profiles.2. DAF FHIR profiles to PCORNet CDM mapping to enable data mart population3. Pilot would pilot capability (C1): Standardize data extraction mechanism from clinical data sourcesPotential Pilot• Cerner with GPC CDRN• LA CDRN• pSCANNER
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Steps 2Steps 2
PopMedNet’s Implementation of Query Composition Portal, Data Mart Management View and Query Results View In DAF Phase 3:• Data Mart Management View would be standardized using FHIR resources in capability C2: Standardize metadata about data marts, data sources and networks •Query Composition portal would be standardized using FHIR queries in capability C6: Standardize Query Structure•Query Results View would be standardized using FHIR resources in capability C4: Standardize Query Results for aggregate data and C5: Standardize Query Results for de-identified and patient level dataPotential Pilot•PopMedNet
Researcher Interface
2CDRN 1Data Mart
CDRN 2Data Mart
PPRNData Mart
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Steps 3-5Steps 3-5
PopMedNet’s implementation of Query Distribution mechanism and Query Results View CreatorIn DAF Phase 3:• Query Distribution mechanism would be standardized using FHIR resources in capability C3: Standardize Query Distribution mechanism•Query Results View Creator would be standardized using FHIR resources in capability C4: Standardize Query Results for aggregate data and C5: Standardize Query Results for de-identified and patient level dataPotential Pilot•PopMedNet
Researcher Interface
3CDRN 1Data Mart
CDRN 2Data Mart
PPRNData Mart
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PopMedNet’s implementation of Query Responder Agent, Query Result Creator, Query Execution AgentIn DAF Phase 3:•Query Responder Agent would be standardized using FHIR resources in capability C3: Standardize Query Distribution mechanism•Query Results Creator would be standardized to use FHIR resources in capability C4: Standardize Query Results for aggregate data and C5: Standardize Query Results for de-identified and patient level data•Query Execution Agent would be standardized using FHIR queries in capability C6: Standardize Query StructurePotential Pilots•PopMedNet
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Proposed Technical Proposed Technical CapabilitiesCapabilities
Capability BenefitsAbstract Model
ReferencePilot Deliverable
C1: Standardize data extraction mechanism from clinical data sources
Reduces the onboarding time for data sources within each network
Step 1 • DAF Extract Transform Load (ETL) Technical Specification written by DAF support team based on pilot feedback
• Reuses all the work completed in DAF Phases 1 & 2
C2: Standardize metadata about data marts, data sources and networks
Provides researchers ability to determine which networks have the right data for their activities
Happens out of band
currently
• Proposal and content submitted to HL7 for new FHIR resources capturing the data mart metadata
C3: Standardize Query Distribution mechanism
LHS Data infrastructure not tied to a particular vendor or productAlso helps bridge multiple networks
Step 3 • Proposal and content submitted to HL7 for new FHIR resources to submit queries
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Capability Benefits Abstract Model Reference
Deliverables
C4: Standardize Query Results for aggregate data
LHS Data infrastructure not tied to a particular vendor or productCan be used for other use cases such as surveillance, quality reporting
Step 5 • Proposal and content submitted to HL7 for new FHIR resources capturing the query results data
• Includes View Create and View Results
• Proposal covers C4
C5: Standardize Query Results for de-identified and patient level data
LHS Data infrastructure not tied to a particular vendor or productCan be used for other use cases such as surveillance, quality reporting
Step 5 • Proposal and content submitted to HL7 for new FHIR resources capturing the query results data
• Proposal covers C5
C6: Standardize Query Structure
LHS Data infrastructure not tied to a particular vendor or product
Step 2 • DAF Support team Draft a “DAF Query Composition Technical Specification” based on pilot feedback
• Reuses existing FHIR Search capability
• Includes Composition Portal and Query Execution Agent
• Technical Specification Covers C6
Proposed Technical Proposed Technical Capabilities Capabilities CONTINUEDCONTINUED