05-P006 Regulation of transcriptional elongation by spt5 during drosophila development
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Transcript of 05-P006 Regulation of transcriptional elongation by spt5 during drosophila development
environment’’ for efficient expression of tissue-specific genes via
modulating high-order chromatin remodelling.
doi:10.1016/j.mod.2009.06.208
05-P004 – Withdrawn.
05-P005
Ddc, a candidate developmental gene in heart and its role in
disease
Adam Prickett, Ruth B. McCole, Reiner Schulz, Rebecca J. Oakey
Department of Medical & Molecular Genetics, King’s College London,
London, United Kingdom
Dopa Decarboxylase (Ddc) is an enzyme that plays a funda-
mental role in the biosynthesis of catecholamine neurotransmit-
ters and serotonin. A short form transcriptional variant of Ddc
called Ddc_exon1a which originates from an alternative promoter
at exon 1a, is highly expressed in the trabecular cardiomyocytes
during development of pre-natal heart and is progressively
silenced during post natal development. Ddc_exon1a has recently
been shown by our group to be epigenetically regulated via geno-
mic imprinting in mouse heart in a tightly regulated tissue-spe-
cific and transcriptional variant-specific manner. Ddc and
Ddc_exon1a show bi-allelic expression in all other tissues.
We aim to show by analysing Ddc+/ and Ddc/+ knockout mice
how ablation of Ddc_exon1a affects heart-specific development.
We also will look at downstream target genes using microarray
analysis. We predict that the knockout may affect compaction
of the myocardium during mid-gestation, which could lead to car-
diomyopathies in adults. It has recently been shown that Ddc
imprinting is controlled by epigenetic mechanisms via a differen-
tially methylated region located in CGI2 of adjacent Grb10,
another gene imprinted in development, CGI2 contains a putative
CTCF binding site. We present our current findings looking at
expression patterns of Ddc_exon1a and Grb10 in the mouse
embryo using immunohistochemistry, insitu hybridization and
qPCR. Furthermore we look at the role of the insulator protein
CTCF using ChIP analysis and RNAi knockdown, to assay binding
and function of this protein at this gene locus.
doi:10.1016/j.mod.2009.06.210
05-P006
Regulation of transcriptional elongation by spt5 during dro-
sophila development
Barbara Jennings1,2, Robert Harvey2, David Ish-Horowicz1
1Cancer Research UK, London Research Institute, London, United
Kingdom2UCL Cancer Institute, London, United Kingdom
Transcription elongation has become recognised as a critical
point of control during the expression of many genes during
development. For example, genome-wide screens for promoter
proximal paused RNAP II in Drosophila have revealed that
approximately 20% of genes in S2 culture cells, and 10% in early
embryos, have initiated transcription but are transcriptionally
paused. In both cases, the sets of paused genes are enriched for
genes known to respond to developmental cues and environmen-
tal stimuli.There is mounting evidence that the Spt5 protein pro-
vides a key junction between developmental regulators of
transcription and the core transcriptional elongation complex.
Mutations in Spt5 recovered from Drosophila and zebrafish that
compromise its ability to cause transcriptional pausing result in
discrete developmental defects, indicating that Spt5 mediates
gene specific regulation. Spt5 acts as both a negative and a posi-
tive regulator of elongation, and the switch between these activ-
ities at the promoter proximal checkpoint may provide a critical
point of regulation by contextual transcription factors.We have
characterized a missense mutation in Drosophila Spt5 (W049)
that affects the transcription of a subset of genes during
development. Expression of the gene even-skipped (eve) is
directly subject to repression mediated by Spt5. Enhancer-
reporter constructs reproducing expression of specific stripes of
eve expression are affected differentially by Spt5W049 indicating
that Spt5 can regulate transcription in an enhancer-specific
manner. The aim of our current work is to ascertain the
molecular mechanisms by which contextual transcription factors
regulate transcriptional pausing during development.
doi:10.1016/j.mod.2009.06.211
05-P007
X chromosome inactivation in murine extraembryonic develop-
ment at post-implantation stages
Catherine Corbel, Patricia Diabangouaya, Edith Heard
Institut Curie-CNRS UMR 3215, INSERM U934, Paris, France
X-chromosome inactivation (XCI) enables dosage compensa-
tion between XX females and XY males. It is an essential process
that occurs during early female development. Our project aims to
investigate the status and mechanism of XCI in female embryos
at post-implantation stages (E6.5-8). In the embryonic lineages of
mice, X inactivation is random, with either the paternal (Xp) or
maternal chromosome being affected. In cells of extraembryonic
tissues, imprinted X inactivation of the Xp chromosome is found.
We are interested in the potential differences between these two
types of XCI process during post-implantation development. The
inactive state of the Xp in extraembryonic tissues is thought to
be less stable than in embryonic tissues. Recently it was shown that
some genes are more prone to escape XCI than others in extraem-
bryonic tissues (Patrat et al, PNAS, 106:5198, 2009). al., 2009. PNAS
106, 5198). However little is known about the basis for this relative
instability and such variability. We have set out to use an ’ex ‘ex
vivo’ approach in order to evaluate the status of X-linked gene
silencing/reactivation in frozen sections of post-implantation
embryos. The epigenetic marks on the inactive X and the nuclear
organization of the X chromosome are being analyzed in different
tissues at precise developmental stages. This analysis is being car-
ried out both in wild type wild-type embryos and in mutants for
various factors thought to be involved in XCI.
doi:10.1016/j.mod.2009.06.212
S114 M E C H A N I S M S O F D E V E L O P M E N T 1 2 6 ( 2 0 0 9 ) S 1 1 3 – S 1 1 9