In praise of grumpy old men

@rdmpagehttp://iphylo.blogspot.comChair @GBIF Science Committee

#fm10ed

Leon Croizat Tracks=Panbiogeography

Gary Nelson & Norm PlatnickPhylogeny+ geography= cladistic biogeography

Ted Nelson Hyperlinks and hypermediaTwo-way links and “transclusion”= Xanadu

Tim Berners-LeeHTTP, URL, HTMLOne-way links= world wide web

Web page Other web page

Web linking, one way, document-level, “target” doesn’t know that it is linked to (“cited”), link can break (404)

text

Work Source

text

Xanadu linking, two way, fragment-level, “source” knows it is linked to, source content is embedded, links don’t break

Xanadu

Wait, WTF has this to do with floras?!

What is a flora?

• Draw polygon (shape) on map

• Get list of all species within that polygon

• Get original descriptions/revisions for those species

• Add locally relevant information

• Mash together (“mashup”), and we’re done!

iSpecies.org for Horsfieldia

A New Account of the Genus Horsfieldia (Myristicaceae), Pt 2W J J O De WildeThe Gardens' bulletin, Singapore 38(1): 55-144 (1985)

http://biostor.org/reference/175018

Horsfieldia lancifolia

Flora Malesiana. Series I - Seed Plants, Volume 14. Myristicaceae

DescriptionDescription

Flora Article

Embedding text and images

Embedding data

van Balgooy 3973

van Balgooy 3973

Description

Article Specimen

{"key": 1139234988,"scientificName":

"Horsfieldia lancifolia W.J.J.O. de Wilde","kingdom": "Plantae","phylum": "Tracheophyta","order": "Magnoliales","family": "Myristicaceae","genus": "Horsfieldia","species": "Horsfieldia

lancifolia","genericName":

"Horsfieldia","specificEpithet":

"lancifolia","taxonRank": "SPECIES","decimalLongitude": 121.75,"decimalLatitude": -2.25,"continent": "ASIA","stateProvince": "Sulawesi","year": 1979,"month": 7,"day": 11,"occurrenceID":

"http://data.biodiversitydata.nl/naturalis/specimen/L.1769594”}

Data

(GBIF)

Data

Xanadu in the 21st century?

text

Article Annotations

table

annotation

annotation

@hypothes_is

Annotating a scientific paper

Aggregating annotations (iPhylo)http://iphylo.blogspot.co.uk/2016/06/aggregating-annotations-on-scientific_30.html

Deep linking requires a culture of being open

@okfn

www.theplantlist.org

You may not alter, transform, or build upon this work

The Plant List 1.1

Use of Content in Derivative works is encouraged. We do however require prior written permission for any reposting, sub-licensing, reselling, or other forms of direct redistribution of Content in their original format, unless they amount to a Derivative work. If you wish to provide a service through which Content is otherwise made available for redistribution, please contact us directly at editors@theplantlist.org.

http://doi.org/10.15468/btkum2

Open versus closed data and the challenge of creating a 21stC flora

1. Data needs to be open (e.g., scientific names – IPNI, I’m looking at you)

2. Scientific literature needs to be open access (taxonomists I’m looking at you)

3. Question: How do we make (1) and (2) happen?